rs45689839 SNP Detail

Summary

• ID
  rs45689839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116130944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAATGCAG GATGCTAACT
  AGGCTGCATT TTATCCTACG CCGCGAGCTT GCAGGAAGCA CCGATGAACG CAACCTAAGA
  TGGGGACCCC AGTCTGGGTG AGAAATAACA CAGGCTGAGG CCAAAGCTGG GGTTCCCTAA
  CTCCCTGACA TCAGATCAGG AACAGAGGGG GCCGGAGTGC TGAGGATGAC GAGCCCAGGC
  R
  GAGGAGAGCG GGACTCCAGT TTAGCTAAGC GGCAAGTGTC TGGGAGCACT GAGGGGCCTT
  CTGCAGGAGA CTTAGGCAGA GGGTCTGGAC GGCAAAGGTT TCCCCCTACG GAGGGACTTG
  ATGAGAGAGA GAGTCCCTGG TTACAAACTG TTTATTGATT GTTTATCGTG CAGAATAGGT
  GCATACCACT TCCTCGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60437481	NES15945688	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs45689839					SNP	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437481	NES15945688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116130944 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Cpgi13730	CpG island 13730			within coordinates
Rr583700	regulatory region 583700			1335 bp proximal