rs45688189 SNP Detail

Summary

• ID
  rs45688189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117152969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTTTCTT TGATAAATTG CTTGTGAACC ACATTTGCCA
  AGTGGCCTCC AGGCCTCAAA CTCAAAGACC GAGCTAAATC GACTCGGAAG GCAATGCTGA
  R
  TGAAGATTGT GGGAACTGAG ATAGATACAC TCCTCTATGT TGCAATGTGA TTAATGGTTC
  TACTAATTTT ATCTAAGGGG GCGCAGAGAA GAAAAAGTGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60932503	NES16191132	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45688189					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932503	NES16191132	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117152969 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	within coordinates
Rr637289	regulatory region 637289	1684 bp distal
Rr637290	regulatory region 637290	1936 bp distal
Rr637291	regulatory region 637291	1885 bp distal
Rr637292	regulatory region 637292	335 bp proximal
Tssr58413	transcription start site region 58413	1994 bp downstream
Tssr58414	transcription start site region 58414	1972 bp downstream
Tssr58415	transcription start site region 58415	1954 bp downstream
Tssr58416	transcription start site region 58416	1936 bp downstream
Tssr58417	transcription start site region 58417	1882 bp downstream
Tssr58418	transcription start site region 58418	1856 bp downstream
Tssr58419	transcription start site region 58419	1836 bp downstream
Tssr58420	transcription start site region 58420	1801 bp downstream
Tssr58421	transcription start site region 58421	1777 bp downstream
Tssr58422	transcription start site region 58422	1764 bp downstream
Tssr58423	transcription start site region 58423	1743 bp downstream
Tssr58424	transcription start site region 58424	1684 bp downstream
Tssr58425	transcription start site region 58425	1645 bp downstream
Tssr58426	transcription start site region 58426	1627 bp downstream
Tssr58427	transcription start site region 58427	1593 bp downstream
Tssr58428	transcription start site region 58428	1582 bp downstream
Tssr58429	transcription start site region 58429	1504 bp downstream
Tssr58430	transcription start site region 58430	1473 bp downstream
Tssr58431	transcription start site region 58431	1374 bp downstream
Tssr58432	transcription start site region 58432	1293 bp downstream
Tssr58433	transcription start site region 58433	1268 bp downstream
Tssr58434	transcription start site region 58434	821 bp downstream
Tssr62622	transcription start site region 62622	1716 bp upstream
Tssr62623	transcription start site region 62623	1696 bp upstream
Tssr62624	transcription start site region 62624	1550 bp upstream
Tssr62625	transcription start site region 62625	1411 bp upstream
Tssr62626	transcription start site region 62626	1346 bp upstream
Tssr62627	transcription start site region 62627	1301 bp upstream
Tssr62628	transcription start site region 62628	1169 bp upstream
Tssr62629	transcription start site region 62629	989 bp upstream