rs45685090 SNP Detail

Summary

• ID
  rs45685090
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103863560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCACACA CACCTGTAAC
  CTCAGCACTT GGGAGGTAAA GAGACAGGGA TCATAGTTCA TGCCAGCCAG AGCTACGTAC
  TCTGTTTCAA AAGGTTTGTT TCCAACTGAT ACCTTTTTAG AAGTAAGTTG AAACTTACTT
  TGTACTGATA TACTATTCAT ATATTTTGTT AAGAACTGGG AAACTTGAAA AAATTAGGCA
  K
  AAAGTGAGAA AATAAGTGAC CCTACCATGA CAGTAGTAAC TATTCATTTT TTAAAATGTA
  TCATTTCTTG CTATCTAGTT CTCTTTGTAG CCAAAAAAAT AAGTTAAGAA AATAAAAAGG
  CAGAGTTACC ATAAACTCCC AATAAAGTGT GTTGGTTAAT ATCAAAACTA CATGCTAAGC
  CAGGTTTGTG GTACACATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147142276	ENSMUSSNP5220513	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320443594	CHEV_2_103873372	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45685090					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103863560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo3	F-box protein 3			Intron
				Noncoding-Transcript-Variant
Rr562010	regulatory region 562010			1712 bp proximal
Rr562011	regulatory region 562011			1804 bp proximal