rs45684262 SNP Detail

Summary

• ID
  rs45684262
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84217267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTGCTGTAAT TTTGCACATC CCAAACACTA CTTAATTTAA
  TGATCAACTC CTGGGATTAT GTCTGGGTTG TGATTTAAAA ATAGACTTTC CAGTGTAAAA
  K
  AAGTCGGCAG GAAGGGGCTC CTTGCTGAAT TAAGCTGTGT TTAAGTGAGA ACCGCCACTG
  CGGAACAACA CGTTCCCTGT GAAGATGGCA AACCGGTTTC A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146830303	ENSMUSSNP3801221	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45684262					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84217267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			643 bp upstream
Rr560244	regulatory region 560244			1330 bp distal
Rr560245	regulatory region 560245			153 bp proximal
Rr560246	regulatory region 560246			654 bp proximal
Rr560247	regulatory region 560247			1162 bp proximal
Tssr24971	transcription start site region 24971			266 bp downstream