rs45683003 SNP Detail

Summary

• ID
  rs45683003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172695440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGTCTC GCAACTGGTG
  AGCTCCAGGC TCAGTGACAG AACCCGCCTC AAAGAACAAG ATGGAGGGAG AACAGAGAGG
  AAGCTCGGAG GCAGAGCTCT GGGTGCTCAT CCAGAGTGTC TGGGTTCAGT GCCAGCATGC
  ACACGGAGGG TCTGGACCAC GGAGGGTCTG GACCACGGAG GATCTCAACT GACCTCACTC
  Y
  GGTTCCAGGA GATCCAGTGC CTCCTCTGGC CTCTGTGAGC TCTGCCTGCA CACAGACACA
  CAACAGGCGA ACACACCCAT GCACATAAAA CAAATGATAA TGAGGAGGAG GAAGAGGAGG
  AGGAAGAGGG GGAGGGATGC AGCTCAAGCG GTGCAACGTT TGCCTAGTGT GCAGGGACCC
  CTGGGTTTGG TCCTCGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148324258	ENSMUSSNP577877	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320620534	CHEV_2_172679148	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45683003					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172695440 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	485 bp proximal
Rr571756	regulatory region 571756	710 bp proximal