rs45682386 SNP Detail

Summary

• ID
  rs45682386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141231302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGGGACC ATTCTCATTC
  AGACCAATGA GTCTTACTAT GTAATACTGG CCGGCCTCGA ACTCATAGAA ATCCATCCAC
  CTGCCTCTGC CTCTTTGGTG CTGTTTACCA TGAACCACCT TTTCTAAAAA ACAAACAAAC
  AAGAAACTCC GGATGTCGCT CTGCAGCTCA GGCTTGAGTG AGAGCCTCCT TCCTTAGGCC
  Y
  TTGAGTACAA CAACCCAGGT GCCAGCCACT ATACCCAGCA AAAACGTAGG CTATTTCATT
  TCAAACGAAA TCCCAACTGG GTACACCTGA GGCAGCCTGT GTCAATGCCT AAGCCAATAT
  ACTTTGAGGT TTTGTCCTTC CCAAATGTAA CTTTACGCTA ACTCTCCGTC CTGTCCAGGA
  CACGAGAGAA GCCCGCTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147739590	ENSMUSSNP3424404	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45682386					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141231302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			568 bp proximal
Rr603781	regulatory region 603781			1941 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant