rs45675577 SNP Detail

Summary

• ID
  rs45675577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107467630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGCTAA ACCCAGGCTG
  AGTTCCCAAG CTCGCTGGCT ACCTGGTAGG ATGGCTGCTG TCCATCAGAT GTCAGGCTCA
  GCTGGGATGG GAACATCTAC AGTCGTAACC TTGGGGTTAG CAAGCTGAGT GGGAGAGGCA
  GACAAGGCAA CCCTGAGTTG CTTCCCTGCT GGTTTATACC CAGGTGAGAA GGCTGAGTGT
  Y
  TCTCCAGGCC AGATGCCTCT GGGTCTGGAC TGAGTTTGTG TGATGAACAT GGGGTTTCCA
  GACCTGAGAC CCCACTCCCT ACTTCCTGCT GGGTCAAGGC TAGGTTCTTG GCTTGACCGG
  GAGCCAGTAG CTCATGAATG ATAGAAATCC CAGGGTCTGG ATGCTCCAGG TGACAGAATC
  TCCTGATCTG TCCCAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135585293	ENSMUSSNP891800	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45675577					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107467630 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	960 bp upstream
Rr582999	regulatory region 582999	984 bp distal
Rr583000	regulatory region 583000	654 bp distal
Rr583001	regulatory region 583001	938 bp distal
Rr583002	regulatory region 583002	638 bp distal