rs45672702 SNP Detail

Summary

• ID
  rs45672702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117656089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAGCTAC TCCATCTATG
  GGCTTTTGTT ACAGCAAGCA AATAGACAGA CATCTCTCAT TTCTCCTCTT GCGTTCTCTT
  TTTATAAATA AAAGTCAGAA CCGGGCTATT CTTGTGGGAA GCTGCATGTA GCAGGATGCT
  GAGGACTCTG TATACATTAG TCCCCTTAAT CTTCATGGCA GCTCCACAGA GTGGAGTGAA
  R
  GGCTGTTATT ATGAAGCTGA CTTTATGGAT GGCGGAACTG AGCTCAGATA CATTGACTGA
  GCAGAGACCA CACAGAGATT ATATATGGAA TTCCATTCTA TTAACAGTTA TCAGCCCCTT
  CCGAAGGAGC ACAACAATCT GGGACATAGA GTGCTCTTCA CAGTGGCCTT TCTGCCTAAG
  AATAGATGGG CAAGTCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60933641	NES16203070	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	G	G		A
ss321923016	CHEV_6_117629146	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45672702					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60933641	NES16203070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117656089 () rs orientation: forward

Symbol	Name	Function Class
1700030F04Rik	RIKEN cDNA 1700030F04 gene	79 bp downstream
Rr637352	regulatory region 637352	1664 bp distal
Rr637353	regulatory region 637353	499 bp distal