rs45672547 SNP Detail

Summary

• ID
  rs45672547
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76289294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAAGGTT AGATGTGCAA
  ACTTAGGGAA ACTACCATCA GAAACACAGC AAAAGCACAC AGAACCCCAA AACTCTCCAG
  TCATTTTGGA AAGAAAACCA GGCAAGTTTC TAGGCATACG AGAAAGAAAA CAAAAGCTAT
  TACCCTTTTC CTGAATACCA TGTTCTTTTA AGACTATATA AGTCACCTTT AATTGTTAAA
  G
  ATGGGTCACA AACACCAGAG TTTGAGAAGG CATTTAACTT AGTGGTGTGT GTGTATGTAC
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  TTTGATTTTG GCTTTGTTAG TCAACATAGA GAATGTTACA GGATCACCTA AAACAAATAA
  TGAAGCTGAA CATTGTGGTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146587070	ENSMUSSNP4930133	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45672547					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76289294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr376702	regulatory region 376702			107 bp downstream
Rr594092	regulatory region 594092			178 bp distal
Rr594093	regulatory region 594093			666 bp proximal