rs45671788 SNP Detail

Summary

• ID
  rs45671788
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41516956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAAATAAT TGAAAGGCAC AGTTAGGTTT TATTCTCCCA
  TTTATCACAC TATGACGTCT GTGAATCAAA CCTGTTTTAT TCAGAATTAT GATCTTGTCT
  C
  TTGGGTTCAA TATCTGATTT TGTAATTAAT AATCATTGTT CTTATTTTCT AAATGGAAAT
  TTTAATGTGT ATTTTCCTCC TTTGGATATT GACTGTAAT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320728791	CHEV_3_41366443	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45671788					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41516956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13118	CpG island 13118	635 bp proximal
Cpgi13119	CpG island 13119	1993 bp proximal
Gm31266	predicted gene, 31266	within coordinates
Jade1	jade family PHD finger 1	Intron
Rr575965	regulatory region 575965	433 bp proximal
Rr575966	regulatory region 575966	827 bp proximal
Rr575967	regulatory region 575967	1167 bp proximal
Rr575968	regulatory region 575968	1421 bp proximal
Rr575969	regulatory region 575969	1843 bp proximal
Tssr29000	transcription start site region 29000	1830 bp downstream
Tssr29001	transcription start site region 29001	797 bp downstream
Tssr29002	transcription start site region 29002	835 bp upstream
Tssr29003	transcription start site region 29003	872 bp upstream