rs45670009 SNP Detail

Summary

• ID
  rs45670009
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGAGCC AGCAGGCATT
  TCTACTTAGC TCCTGCTGAG TGGAATTCCG GGCCTGAGAA ATCACTGTGC TAGCAAGGCC
  GTGGGTAGAA AGGAGAAACA ACTTTAACGG TTTCCTCTTT TTCTACTCGA TATTTATTGG
  TCAACTGGAA TCAAATTGTT TACTAGCAGG TAAGAAAACA CGGCAGATGT TTCAATGGGC
  W
  CATATATTGC CTACATGTTA GGATTTTTTC CCCAAAGGTG TACATTTTTA TAATTTTACA
  TTTTAAATTT TACAGAAGAA ATAAATATCG GGCTTAGACA AAATTCCAGG TTTGCCAGGG
  AAACCTTTGG TCTGCCATAC GCCTTTGGGA GTTCCTGATC TGTCACCCTG ATGTGATTTT
  TAAGGTCAGC CTGCCTGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52684850	NES15534651	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45670009					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684850	NES15534651	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565252 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Intron
Tssr4149	transcription start site region 4149	848 bp upstream
Tssr123695	transcription start site region 123695	1406 bp upstream
Tssr123696	transcription start site region 123696	1147 bp downstream
Tssr123697	transcription start site region 123697	1337 bp downstream
Tssr123698	transcription start site region 123698	1468 bp downstream
Tssr123699	transcription start site region 123699	1559 bp downstream
Tssr123700	transcription start site region 123700	1584 bp downstream
Tssr123701	transcription start site region 123701	1642 bp downstream
Tssr123702	transcription start site region 123702	1662 bp downstream
Tssr123703	transcription start site region 123703	1714 bp downstream
Tssr123704	transcription start site region 123704	1765 bp downstream