rs45669711 SNP Detail

Summary

• ID
  rs45669711
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125644157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTATATT TTCTATAACT
  AGATAGAATA TTTTAAGCCA TATATCCAAT CACAAACTCA ACAGTTTCAA ATAAAAGAAA
  GGGAGTTGTA TACTTCCATA TTGCCCTATT TAACGTCTAG TTAAAATTTT GATATTTCTG
  GTATGATGAT ATTGACTATA GTAATAATTT TTAGGGCCAT TAATCAAAGA GGAATAGTAT
  W
  ACATGTTTAA CCATTACATG CTTTCAGGCA TAGTTTCAGA CACGTAGTTG TGACTTGTAT
  GTATTTGTTG AAGACAATGA TACAAGTATA AATGATACAT GGCCATTGTC TAATGGGCAT
  TTCTATGCTC ATGCCCAGTC TGATAAATGT AGAAGCCTCA TGCAATATTC ACAAGTATAA
  TATGTTGGCA TTTGTGTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135817813	ENSMUSSNP2571779	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320940440	CHEV_3_125553426	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45669711					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125644157 () rs orientation: forward

Symbol	Name	Function Class
Rr584614	regulatory region 584614	1024 bp distal
Rr584615	regulatory region 584615	1147 bp distal