rs45669002 SNP Detail

Summary

• ID
  rs45669002
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137003175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GAGAGGGAAC GGGAGACCAA
  A
  TTTGTCTATA CAAGCTGAGA TGTGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147601334	ENSMUSSNP1811372	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321362835	CHEV_4_136831779	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45669002					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137003175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15125	CpG island 15125	811 bp proximal
Rr602574	regulatory region 602574	1233 bp distal
Rr602575	regulatory region 602575	745 bp distal
Rr602576	regulatory region 602576	1135 bp proximal
Rr602577	regulatory region 602577	1636 bp proximal
Tssr1345	transcription start site region 1345	1618 bp upstream
Tssr39739	transcription start site region 39739	1636 bp upstream
Tssr39740	transcription start site region 39740	1723 bp upstream
Wnt4	wingless-type MMTV integration site family, member 4	1771 bp upstream