rs45665965 SNP Detail

Summary

• ID
  rs45665965
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37782073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAGGTACA TAGCTCTTGG GAGGCAGAGG CAGGCAGATT
  TCTGAGTTCT AGGCTAGCCT GGTCTACAAA GTGAGTTCCA GGACAGCCAG GGCTACACAG
  M
  GAAACCCTGT CTCAACCCCA CCCCCCCCCC CCAAAAAGAA AGAAAGGCAG GTACAGTGGG
  GCACTTGTAG TCTCAATGCT AAGGAGAGAG AGGCAGGGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134812121	ENSMUSSNP717975	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320712101	CHEV_3_37626846	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45665965					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37782073 () rs orientation: forward

Symbol	Name	Function Class
Gm36620	predicted gene, 36620	within coordinates
Rr575551	regulatory region 575551	832 bp distal
Rr575552	regulatory region 575552	206 bp proximal
Rr575553	regulatory region 575553	1220 bp proximal