rs45664379 SNP Detail

Summary

• ID
  rs45664379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22537162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTCTAA ATGCTCACTC
  TTGTGTAACA AACTTTGATT AGTCTAAAAC AGCTACAAGT TATGGGATAT CCTTCCTATA
  TTTAGGTATG CGGCTTCAGT GCTGATCCAA CACATATAGA CATCTTTTGA GGGTTCTTGC
  AAGATATTGT TTCTTATTAA AAAGAGTAGC CCTTAGGAGG AAGGCCTTTT TGGTGACATC
  Y
  AACTTGCTTC CTTGTTTGAA TACAATCATG TGAGTATGTA AAATTCAGAG CTGTGGAGGG
  CATGTTGCAA CCCCACATAC CACATAACAG AAATTTGAAA ATAATTTTGT TCATGGACAG
  AGTGATCTAT GGAAATAATG CTGGTTGCAT CCTCAGACTT TGTGCCCAAA TACTCACTAG
  CCTTCTGTTT TCAGTAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60870860	NES15982539	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C		C
ss321765812	CHEV_6_22487163	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs45664379					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60870860	NES15982539	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22537162 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	246 bp proximal
Rr627120	regulatory region 627120	302 bp proximal