rs45663377 SNP Detail

Summary

• ID
  rs45663377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119495154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC AGGTTATAAG GATTGATGGT
  R
  GAGTACCTCC CCCTGCCGCA GCAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147338585	ENSMUSSNP4404074	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320476626	CHEV_2_119490409	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45663377					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119495154 () rs orientation: forward

Symbol	Name	Function Class
Gm75025	predicted gene, 75025	431 bp downstream
Gm75032	predicted gene, 75032	420 bp upstream
H3f3c	H3 histone, family 3C	953 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	1852 bp upstream
Rr397235	regulatory region 397235	1701 bp downstream
Rr563557	regulatory region 563557	1886 bp distal
Rr563558	regulatory region 563558	1362 bp distal
Rr563559	regulatory region 563559	1259 bp proximal
Tssr25825	transcription start site region 25825	1838 bp upstream
Tssr25826	transcription start site region 25826	1477 bp downstream