rs45662556 SNP Detail

Summary

• ID
  rs45662556
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71763763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCAGCTT TGATGGTATA
  CTCCTCTCTT TCACCAAGGT CTTTGGAGCT GTGTTTACGA GGCTCCCGGA AAAACAGAGC
  TGGAAGCTCT TGCCTATAGC AGCACCCATG TAGCAGCTCC TGTTTCCTCA TCCCCACCCT
  TGTGCTAGCC CACTTTTCAC ACCACAGACT ACATCCACTC TCTTGACTTG CTGCTGGAAA
  C
  ATAACTTTGC CTTTGTAACC AGTAACCACA AGGAGGCAGT TTTGGCAACA GCCTGCTGTC
  TGACTAGATG GGCATCATTC ACTGGGAAAT CGAATTATGT TTTCTCATTC CTTTATTTTA
  TTCCCAGTCA GTCAGTCTGA CCTTTTAAAA ATAGGACTCA GAGTTGCTAT TTCTAGGATG
  ATAAGAGGAC GTTCTATAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133277273	ENSMUSSNP3381429	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45662556					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71763763 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632005	regulatory region 632005			22 bp proximal
Rr632006	regulatory region 632006			1409 bp proximal