rs45661842 SNP Detail

Summary

• ID
  rs45661842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103114039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATACCATG TGAAAGTTGC AAGTGTGGAC TTCCTCTGCA
  GTATACTTGT GGGCTTTCCA GTGAGTGCTG TAGAAGTACC CAGCAATACA TCCTGTTAAC
  Y
  GAGGGTGATA CGTCCTTCCA AGATATAGTT CACACCAGTT CATTGTTTTC TTTTGACTGG
  TGTGCATGAT GATGAACGCC TAACGGACTG TGGCTGCTCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60429790	NES15927551	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs45661842					SNP	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60429790	NES15927551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103114039 () rs orientation: forward

Symbol	Name	Function Class
2410024N13Rik	RIKEN cDNA 2410024N13 gene	within coordinates
Rr375502	regulatory region 375502	354 bp downstream
Rr375503	regulatory region 375503	309 bp upstream
Rr397899	regulatory region 397899	within coordinates
Rr582336	regulatory region 582336	within coordinates