rs45659787 SNP Detail

Summary

• ID
  rs45659787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152497715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGGTCTC CAATTCCATT
  CATTTCCCTC TAGATGGTGC AGTTTGGCTC AGATCATACA GTGCATTGCC TTTGTCCACT
  CACTGGCTGA TAGACATCTC ACTGGCTCCT TACCTTGGCT GTTGTGGGTA GTGACATGAA
  TGCAGTAAAC ACGAATGCTG TTTTATCTCC TATGGAGAGA TTGAACAAGA CTGCAGTATT
  Y
  GCTGTAGCAC AGCTGCGAGC AGCATTCTTT AAGGTTGATC AAGTTTGCAG CACTATTTCT
  GAGTTCTGTG TAGACGTTCC AGGACTGCAC ACCACTCTGA CTTCCTTTGC TTTTCCAAAA
  TGTTGTAATT GCTGGAAACA GACATCTATG TAGTGTTTAC TATGGGCAAT ACTGCAAATT
  CAATGATGCT TCTCACATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss61101170	NES16612784	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs45659787					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101170	NES16612784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152497715 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			157 bp distal