rs45659503 SNP Detail

Summary

• ID
  rs45659503
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67510850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGAAGT TGCCCAGTCA
  TTTATATCCT AGGACTGCTG GGGGTGGGGG GTGGGGGTGG GCTTTGCGCC TTCACGTGGT
  TTAAAACCCA CAAAGGAAGG TGTGCCTGTT AATAAGCAGG CAAAGGCTGC GTCCATCTCC
  CACTCCTGTT CAGATCTGAA GGCGGTTAGT TTTAGCAACT TCCTTCAAAG GAACAGCAAC
  S
  TCAAAGTTTA CATTTTTCCC TCTACCCACT GCTGAGGATG GGACCGAGGG CCGGGTCAGA
  TGCGAGGCAA GCACACTAGC CCAGTCTCTA GGAAACACCA GAGTATCAAC AGTAAATGTT
  AGGATTTCAC AAGGAAGGAA GCATTAGAAT TTAAAATATA AAATTCAAGC ATTAGACAAA
  GGAGAACAAT AAAATGATAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894268	NES15959589	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45659503					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894268	NES15959589	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67510850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	458 bp distal
Cpgi17512	CpG island 17512	784 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	560 bp upstream
Rr368087	regulatory region 368087	493 bp downstream
Rr631664	regulatory region 631664	1799 bp distal
Rr631666	regulatory region 631666	571 bp distal
Rr631667	regulatory region 631667	70 bp distal
Rr631668	regulatory region 631668	925 bp proximal
Rr631669	regulatory region 631669	1368 bp proximal
Rr631670	regulatory region 631670	1919 bp proximal
Rr631671	regulatory region 631671	1920 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	196 bp downstream
Tssr1867	transcription start site region 1867	1325 bp upstream
Tssr1868	transcription start site region 1868	1289 bp upstream
Tssr1869	transcription start site region 1869	528 bp upstream
Tssr1870	transcription start site region 1870	397 bp downstream
Tssr1871	transcription start site region 1871	48 bp downstream
Tssr1872	transcription start site region 1872	906 bp downstream
Tssr61254	transcription start site region 61254	203 bp upstream
Tssr61255	transcription start site region 61255	864 bp downstream
Tssr61256	transcription start site region 61256	1328 bp downstream
Tssr61257	transcription start site region 61257	1819 bp downstream
Tssr61258	transcription start site region 61258	1917 bp downstream
Tssr61259	transcription start site region 61259	1962 bp downstream