rs45656781 SNP Detail

Summary

• ID
  rs45656781
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17763415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTCATCT GCAAATTCAA
  ATTCTCATTG ACACATCCAG TTTGCGTAAA GTAAAAACAC AATCATAGAC ATTTTAACTG
  AGACGGTTCC ATAGTTGTTA GACCCTTTCT TGCCATAGCA ACTTAGTTTT TCTTCTTGCT
  TTTTATTTTC ATTTTAGTAA TGGAAATGTT CATCTTTTAG GCACTTTGGC CAGTATGAAG
  W
  TTTTTTTTTT TCTGATGAAT GCCTTCAGGA TTTTCTTGAC GTGACATTTT TAAGTAAATA
  AAATTAAATT CTGTCTGTGG AATTAATGTT CTCTCTCTCT CTCTCTCTGG ACATTAAATG
  CCTCTAAAAT TAGGATTAGT CTTGTTTGGT TTTCTTTTTT CCCCCCGCTA TTTTCTATTT
  TCCATTTTCT CCCTCCCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133022205	ENSMUSSNP680956	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45656781					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17763415 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			1267 bp upstream
Rr626856	regulatory region 626856			519 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			531 bp downstream