rs45655140 SNP Detail

Summary

• ID
  rs45655140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126341579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACACCAC ATGGTCTGTC TCCTTCGCCG GGGAATGGTC
  CCACCAACTC ACCTCAACCT GGACCTAACT TTCGCCCTGA GAAACGGGGT TTCCCAGCAA
  K
  GCAGCTAGAC CGAACAAGTA TCCACTGGGT AAGCACACCC ACGCAAAAGC AGCGCTGGAC
  TGGAAGCTCC AGTAACTACA AAAAAACAAA ATGACTCTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147505119	ENSMUSSNP6753204	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45655140					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126341579 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp8b4	ATPase, class I, type 8B, member 4			Intron
				mRNA-UTR
Rr564346	regulatory region 564346			383 bp distal
Rr564347	regulatory region 564347			within coordinates
Rr564348	regulatory region 564348			178 bp proximal
Rr564349	regulatory region 564349			938 bp proximal
Tssr632	transcription start site region 632			356 bp upstream
Tssr19934	transcription start site region 19934			583 bp downstream
Tssr19935	transcription start site region 19935			316 bp upstream
Tssr26038	transcription start site region 26038			1485 bp upstream
Tssr26039	transcription start site region 26039			22 bp downstream
Tssr26040	transcription start site region 26040			55 bp downstream
Tssr26041	transcription start site region 26041			72 bp downstream
Tssr26042	transcription start site region 26042			117 bp downstream
Tssr26043	transcription start site region 26043			180 bp downstream
Tssr26044	transcription start site region 26044			255 bp downstream
Tssr26045	transcription start site region 26045			633 bp downstream
Tssr26046	transcription start site region 26046			972 bp downstream