rs45647079 SNP Detail

Summary

• ID
  rs45647079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117887024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTTACC GCCATAAACT
  ACAATGGATG TAAGTAAATC ATCTACATTT TTCATAAGGA AAAAAATGGG GTTCAGAAAG
  CTTGAATGGG CTGTTTAAGG TCACACAAAC TAAGAGGCAG AGGCAGAGGC AGAATTCAGG
  CCCTGTTCTG ATCTATGCTG TGAATAGCAC ACAACCAGAA GAGACTCTGT AAAGAGAGGT
  R
  GAAATATGGC GAAGGCATTC ATTCCCCACA CAGCAGAATT CTTAACTTAG ACAACTCTCC
  CTGAGCACAT CTGAGATTCC CTTGGTAGAA GGTGCTGGGC AGGAAGAGAC TATGTAACAA
  GAGGCAGGAA GGTCCCAGCT TGCCCCTCAC AATGTGAGTT AAACGCATGG CCATATAAAC
  TCCCTGGACA AAGTCCAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147297456	ENSMUSSNP5888775	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321281097	CHEV_4_117702432	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45647079					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117887024 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598283	regulatory region 598283			454 bp distal
Rr598284	regulatory region 598284			184 bp proximal
Rr598285	regulatory region 598285			1123 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr43028	transcription start site region 43028			589 bp upstream