rs45646038 SNP Detail

Summary

• ID
  rs45646038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38864011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTCTGT TCAATTCCCA
  GAACTCCAGT TCCTGGGAAT CTAGCACCCT TATCATCAGG TATATGATCT CAGAAGTAAG
  AGAAGTAGCC AAATTTTTAT GTTCTCCATT CTGTGGGCAA GGGGCAGAGG ATACACATGT
  GGTGCACAGA CATAATGCAA ATGCAATATC TGTAAACATA AAAAGAAAAT AAAAGACATC
  Y
  GTAGTATACT AACTAGCTCG TTATTTTGAA GAGCCCAGAA ATGTTCTTAA GGTTCCTATG
  TGGGGCAGAG AGTGACCCAC GTGTTCCTCT CCTCCTGGAA AAGGATTATG TGGTTATATA
  TGTGTGTGTG GATATAAGTG TGTGGATATA TATGTATGTG ATAGACTTCT GCCTGCTGCT
  CCTGTTATCA TGTCTTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60388589	NES15898491	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T		T	C	T	T
ss320723310	CHEV_3_38708784	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs45646038					SNP	T	T	C	T	T	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388589	NES15898491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38864011 () rs orientation: forward

Symbol	Name	Function Class
Gm54204	predicted gene, 54204	within coordinates
Rr575706	regulatory region 575706	1971 bp proximal