rs45643517 SNP Detail

Summary

• ID
  rs45643517
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147894266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGCACAACA ACTGCTGCTT AAGAAAGTTT TCAGGTTCCG
  CAAATACTAG GCGCTAGTCT CCCTCCATAA CTTCCTGATC ACGAGGCAGC TGAGATGCAA
  G
  AAGAAAGATG AAACCGCGGA ACTTCCCTTC ATGCTGCCTA GCCCCGCCTT CTGGACCCGC
  CCAATATTCA GCAGCTTCCT GCAATTCTTC TAAGCCTACC T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147982813	ENSMUSSNP6230280	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45643517					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147894266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm20707	predicted gene 20707			within coordinates
Rr377386	regulatory region 377386			within coordinates
Rr398847	regulatory region 398847			1748 bp upstream
Rr604501	regulatory region 604501			997 bp distal
Rr604502	regulatory region 604502			32 bp distal
Rr604503	regulatory region 604503			within coordinates
Tssr44548	transcription start site region 44548			within coordinates
Zfp984	zinc finger protein 984			Intron
				mRNA-UTR