rs45641720 SNP Detail

Summary

• ID
  rs45641720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129896034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTACCA CCCATGTGCC
  ACTGGATGAT GATGCTATGA GGGTTTTTGC TCGCTTGCTT GCTTGTTTTG GGTTTTTGTA
  CATACCCATA GCATCTGTGT ATCTACATCC AGAACCGAAT CATGAAATGC CCCAGAAGAT
  GCAGTAAAGA GAAAGTGACT GGAGGGATGG CTCAGCCACT AAGAGCACTT TTTGCTTTTG
  Y
  AGAGGACCCA GGTTTGATTC CCAGGATCCA CATGGCAGTT CACAACTACC TGTCACACTA
  GATGCATCCA GGATATCCGA TGGCCTCTCT TGGCCTCCCT CGGCACTGTG CAGATGCAAT
  GCACAGACAT GCATGCAGGC AAGAATAGTT ATACATATAT AAAGGGATAA ATAATATTTT
  AAAATAAAAA ACTATTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135891747	ENSMUSSNP5984329	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45641720					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129896034 () rs orientation: forward

Symbol	Name	Function Class
Rr585133	regulatory region 585133	973 bp proximal
Rr585134	regulatory region 585134	1204 bp proximal
Rr585135	regulatory region 585135	1290 bp proximal