rs45641342 SNP Detail

Summary

• ID
  rs45641342
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148267705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCAAGCAG TTTCTCTCCG AGCCATCTCC CTTATCTCTG
  AATTATTTAA AAATACAAGT CCTCATAGCT CTTCCCCTAG ACTGATGTCA GTTCCTACAA
  M
  CCTAACATCC TGTCTGGTCC ACGCCAGAGT CTATGCGCGG ACTTCTTCCC CACATTGAGA
  GTTCTCGCTA CCTCTGCAAC CTCTTTTTTT TTTTTTCCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147995362	ENSMUSSNP3216808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321417864	CHEV_4_147557357	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45641342					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148267705 () rs orientation: forward

Symbol	Name	Function Class
Gm68601	predicted gene, 68601	within coordinates
Rr604623	regulatory region 604623	216 bp distal
Rr604624	regulatory region 604624	1123 bp proximal