rs45640552 SNP Detail

Summary

• ID
  rs45640552
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41359941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA GATCCCCTAT GGCTACATCA
  A
  CTGTTGATGC ATAGCGTGCT ACCAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144675351	ENSMUSSNP1193781	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322633625	CHEV_8_41992258	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45640552					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41359941 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77023	transcription start site region 77023	1284 bp downstream
Tssr77024	transcription start site region 77024	1080 bp downstream
Tssr77025	transcription start site region 77025	1033 bp downstream
Tssr77026	transcription start site region 77026	623 bp downstream
Tssr77027	transcription start site region 77027	294 bp downstream
Tssr77028	transcription start site region 77028	189 bp downstream
Tssr77029	transcription start site region 77029	19 bp downstream
Tssr77030	transcription start site region 77030	996 bp upstream
Tssr77031	transcription start site region 77031	1142 bp upstream
Tssr77032	transcription start site region 77032	1501 bp upstream
Tssr77033	transcription start site region 77033	1764 bp upstream
Tssr77034	transcription start site region 77034	1827 bp upstream