rs45639865 SNP Detail

Summary

• ID
  rs45639865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123028111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCAAGTAG AACCCAAATC TCGGCTGACA GGGAGCCAAC
  CAACCAGCTA CGACTGAGCA AATCTGCCTT CGTCTCCTAG GCCGTGCAAT GTGCTGAATC
  Y
  GGCATTCACG TTTTATCTGC TGTTGGTTCC TGGCTCCTAA AGGATTCCAG CAGAGCTCCC
  TTCCAATCCT TTCATCTCTC TGCCCTCCCA AACAGGAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135760845	ENSMUSSNP1447091	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320918224	CHEV_3_122937380	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs45639865					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123028111 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13775	CpG island 13775			1530 bp proximal
Rr584473	regulatory region 584473			within coordinates
Rr584474	regulatory region 584474			216 bp proximal
Rr584475	regulatory region 584475			1624 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant
Tssr35497	transcription start site region 35497			1649 bp downstream
Tssr35498	transcription start site region 35498			1672 bp downstream