rs45639313 SNP Detail

Summary

• ID
  rs45639313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151617493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGTGAGG CAGGAGTGGG
  TGGTTGGGTG GGGGAGCACC CTCATAGAAG CAAGCAGAAG GGGAAATGGG ATAAGGGGTT
  TGCAAAGTGG AAACCAGGAA TGGGGATAAC ATTTGAAATG TAAATACATA AAATAACCAA
  TAAAAAAAAA AATAAGGGGT CTATAGTCTG TCATCTGTCC TTTGTGATAG ACCAAACTAG
  R
  GAAGAAATGC ACTCTGGCAA ACCCATATCT TCAAGTGTGG TGCAGCCAGA TTTCATACAG
  AAAAGAGCTT GTTCCAGACT TACCTGCTCT GGAGCTCTGA AAACAAGCCA GGGAGCCAGG
  AGACACCTAA CCATAGTCTC TGGGTGAGAA ACAGCCATAC AAGGCAGTTG TAGAAAAGAA
  TAAACCTGAA GGTGGACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61099926	NES16613607	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45639313					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61099926	NES16613607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151617493 () rs orientation: forward

Symbol	Name	Function Class
Gm31596	predicted gene, 31596	within coordinates
Rr587430	regulatory region 587430	300 bp proximal
Rr587431	regulatory region 587431	561 bp proximal