rs45637392 SNP Detail

Summary

• ID
  rs45637392
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116759860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATATTTAC AGCTTATTTC
  ATTTTACTGC CAAAAGTTAG AGAATCATAA TTTAATAATA ATAAAAAAAT CAAACAGCTC
  TTGCAGTGTT AATGTTTGTT GTTCTTGTCC TTTTACAGTG AAGTCTCTGT GTTGTTGAGT
  CTTGGTGTCT TAGGGAATTA ACATCTTTGC CGTCATGGAC ATATATAAAA ATTATTTCAG
  K
  GTAGGAGAGC AGTTAAAAGA TTATCTCTGA GTTTTTGTAA TTTTAATGCC TTTCAAAAAA
  TGAGATAACT CTTGAAAGTT CCCTGGGTAC GGTGTGTTTT CTTTTCCTAG GAAGAAAGAA
  TAGCAGGGGT GGCTTCCTGG GCAAGGCCAG GGCGGAGTAA GCTGGCATTT CCCAGGGTGT
  GCAGGAGGAG AGTGGTTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435462	NES15933243	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G	T	T	T	T	T	G	T	T	G
ss135676568	ENSMUSSNP4290184	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45637392					SNP	T	T	G	T	G	T	G	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435462	NES15933243	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116759860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52613	predicted gene, 52613			983 bp upstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583813	regulatory region 583813			1497 bp distal
Rr583814	regulatory region 583814			58 bp proximal
Rr583815	regulatory region 583815			541 bp proximal
Rr583816	regulatory region 583816			575 bp proximal
Rr583817	regulatory region 583817			1966 bp proximal