rs4226231 SNP Detail

Summary

• ID
  rs4226231
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151005 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGCGC CCCCTGCAGG ACAAGCCCTG
  M
  AGCGTTCCTC GGACTCTGCT CTGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss6389224	AI174028_368	TWGNF	TWGNF-Mouse	f	SNP	C		C		C		C	C	C	C				A
ss12732608	L12029_AN2231_1	ROCHEBIO	RPAMM	f	SNP		C	C	C	C	C		C		C	C	C	C	A
ss12759334	L12029_JC343_1	ROCHEBIO	RPAMM	r	SNP	G	G	G		G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs4226231					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389224	AI174028_368	TWGNF	TWGNF-Mouse-2	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151005 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1376 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			7 bp proximal
Rr637291	regulatory region 637291			58 bp proximal
Tssr58395	transcription start site region 58395			539 bp downstream
Tssr58396	transcription start site region 58396			525 bp downstream
Tssr58397	transcription start site region 58397			490 bp downstream
Tssr58398	transcription start site region 58398			467 bp downstream
Tssr58399	transcription start site region 58399			438 bp downstream
Tssr58400	transcription start site region 58400			405 bp downstream
Tssr58401	transcription start site region 58401			371 bp downstream
Tssr58402	transcription start site region 58402			342 bp downstream
Tssr58403	transcription start site region 58403			324 bp downstream
Tssr58404	transcription start site region 58404			313 bp downstream
Tssr58405	transcription start site region 58405			257 bp downstream
Tssr58406	transcription start site region 58406			228 bp downstream
Tssr58407	transcription start site region 58407			206 bp downstream
Tssr58408	transcription start site region 58408			143 bp downstream
Tssr58409	transcription start site region 58409			115 bp downstream
Tssr58410	transcription start site region 58410			97 bp downstream
Tssr58411	transcription start site region 58411			66 bp downstream
Tssr58412	transcription start site region 58412			54 bp downstream
Tssr58413	transcription start site region 58413			30 bp downstream
Tssr58414	transcription start site region 58414			8 bp downstream
Tssr58415	transcription start site region 58415			within coordinates
Tssr58416	transcription start site region 58416			15 bp upstream
Tssr58417	transcription start site region 58417			69 bp upstream
Tssr58418	transcription start site region 58418			102 bp upstream
Tssr58419	transcription start site region 58419			121 bp upstream
Tssr58420	transcription start site region 58420			148 bp upstream
Tssr58421	transcription start site region 58421			167 bp upstream
Tssr58422	transcription start site region 58422			193 bp upstream
Tssr58423	transcription start site region 58423			201 bp upstream
Tssr58424	transcription start site region 58424			263 bp upstream
Tssr58425	transcription start site region 58425			308 bp upstream
Tssr58426	transcription start site region 58426			330 bp upstream
Tssr58427	transcription start site region 58427			357 bp upstream
Tssr58428	transcription start site region 58428			372 bp upstream
Tssr58429	transcription start site region 58429			437 bp upstream
Tssr58430	transcription start site region 58430			482 bp upstream
Tssr58431	transcription start site region 58431			578 bp upstream
Tssr58432	transcription start site region 58432			651 bp upstream
Tssr58433	transcription start site region 58433			687 bp upstream
Tssr58434	transcription start site region 58434			1125 bp upstream
Tssr62617	transcription start site region 62617			468 bp upstream
Tssr62618	transcription start site region 62618			445 bp upstream
Tssr62619	transcription start site region 62619			409 bp upstream
Tssr62620	transcription start site region 62620			376 bp upstream
Tssr62621	transcription start site region 62621			292 bp upstream
Tssr62622	transcription start site region 62622			231 bp downstream
Tssr62623	transcription start site region 62623			249 bp downstream
Tssr62624	transcription start site region 62624			364 bp downstream
Tssr62625	transcription start site region 62625			515 bp downstream
Tssr62626	transcription start site region 62626			611 bp downstream
Tssr62627	transcription start site region 62627			642 bp downstream
Tssr62628	transcription start site region 62628			777 bp downstream
Tssr62629	transcription start site region 62629			957 bp downstream