rs4226230 SNP Detail

Summary

• ID
  rs4226230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151165 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTGGA GGCAAGCAGA GAGCAGGAAC
  R
  GCTAGGAAAG GGTCTCTGAG CACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6389223	AI174028_208	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4226230					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389223	AI174028_208	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151165 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1536 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			132 bp distal
Rr637291	regulatory region 637291			81 bp distal
Tssr58395	transcription start site region 58395			699 bp downstream
Tssr58396	transcription start site region 58396			685 bp downstream
Tssr58397	transcription start site region 58397			650 bp downstream
Tssr58398	transcription start site region 58398			627 bp downstream
Tssr58399	transcription start site region 58399			598 bp downstream
Tssr58400	transcription start site region 58400			565 bp downstream
Tssr58401	transcription start site region 58401			531 bp downstream
Tssr58402	transcription start site region 58402			502 bp downstream
Tssr58403	transcription start site region 58403			484 bp downstream
Tssr58404	transcription start site region 58404			473 bp downstream
Tssr58405	transcription start site region 58405			417 bp downstream
Tssr58406	transcription start site region 58406			388 bp downstream
Tssr58407	transcription start site region 58407			366 bp downstream
Tssr58408	transcription start site region 58408			303 bp downstream
Tssr58409	transcription start site region 58409			275 bp downstream
Tssr58410	transcription start site region 58410			257 bp downstream
Tssr58411	transcription start site region 58411			226 bp downstream
Tssr58412	transcription start site region 58412			214 bp downstream
Tssr58413	transcription start site region 58413			190 bp downstream
Tssr58414	transcription start site region 58414			168 bp downstream
Tssr58415	transcription start site region 58415			150 bp downstream
Tssr58416	transcription start site region 58416			132 bp downstream
Tssr58417	transcription start site region 58417			78 bp downstream
Tssr58418	transcription start site region 58418			52 bp downstream
Tssr58419	transcription start site region 58419			32 bp downstream
Tssr58420	transcription start site region 58420			within coordinates
Tssr58421	transcription start site region 58421			7 bp upstream
Tssr58422	transcription start site region 58422			33 bp upstream
Tssr58423	transcription start site region 58423			41 bp upstream
Tssr58424	transcription start site region 58424			103 bp upstream
Tssr58425	transcription start site region 58425			148 bp upstream
Tssr58426	transcription start site region 58426			170 bp upstream
Tssr58427	transcription start site region 58427			197 bp upstream
Tssr58428	transcription start site region 58428			212 bp upstream
Tssr58429	transcription start site region 58429			277 bp upstream
Tssr58430	transcription start site region 58430			322 bp upstream
Tssr58431	transcription start site region 58431			418 bp upstream
Tssr58432	transcription start site region 58432			491 bp upstream
Tssr58433	transcription start site region 58433			527 bp upstream
Tssr58434	transcription start site region 58434			965 bp upstream
Tssr62617	transcription start site region 62617			628 bp upstream
Tssr62618	transcription start site region 62618			605 bp upstream
Tssr62619	transcription start site region 62619			569 bp upstream
Tssr62620	transcription start site region 62620			536 bp upstream
Tssr62621	transcription start site region 62621			452 bp upstream
Tssr62622	transcription start site region 62622			71 bp downstream
Tssr62623	transcription start site region 62623			89 bp downstream
Tssr62624	transcription start site region 62624			204 bp downstream
Tssr62625	transcription start site region 62625			355 bp downstream
Tssr62626	transcription start site region 62626			451 bp downstream
Tssr62627	transcription start site region 62627			482 bp downstream
Tssr62628	transcription start site region 62628			617 bp downstream
Tssr62629	transcription start site region 62629			797 bp downstream