rs4226229 SNP Detail

Summary

• ID
  rs4226229
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151173 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCATG CGTTTGGAGG CAAGCAGAGA
  K
  CAGGAACGGC TAGGAAAGGG TCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6389222	AI174028_200	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4226229					SNP	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389222	AI174028_200	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151173 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1544 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			140 bp distal
Rr637291	regulatory region 637291			89 bp distal
Tssr58395	transcription start site region 58395			707 bp downstream
Tssr58396	transcription start site region 58396			693 bp downstream
Tssr58397	transcription start site region 58397			658 bp downstream
Tssr58398	transcription start site region 58398			635 bp downstream
Tssr58399	transcription start site region 58399			606 bp downstream
Tssr58400	transcription start site region 58400			573 bp downstream
Tssr58401	transcription start site region 58401			539 bp downstream
Tssr58402	transcription start site region 58402			510 bp downstream
Tssr58403	transcription start site region 58403			492 bp downstream
Tssr58404	transcription start site region 58404			481 bp downstream
Tssr58405	transcription start site region 58405			425 bp downstream
Tssr58406	transcription start site region 58406			396 bp downstream
Tssr58407	transcription start site region 58407			374 bp downstream
Tssr58408	transcription start site region 58408			311 bp downstream
Tssr58409	transcription start site region 58409			283 bp downstream
Tssr58410	transcription start site region 58410			265 bp downstream
Tssr58411	transcription start site region 58411			234 bp downstream
Tssr58412	transcription start site region 58412			222 bp downstream
Tssr58413	transcription start site region 58413			198 bp downstream
Tssr58414	transcription start site region 58414			176 bp downstream
Tssr58415	transcription start site region 58415			158 bp downstream
Tssr58416	transcription start site region 58416			140 bp downstream
Tssr58417	transcription start site region 58417			86 bp downstream
Tssr58418	transcription start site region 58418			60 bp downstream
Tssr58419	transcription start site region 58419			40 bp downstream
Tssr58420	transcription start site region 58420			5 bp downstream
Tssr58421	transcription start site region 58421			within coordinates
Tssr58422	transcription start site region 58422			25 bp upstream
Tssr58423	transcription start site region 58423			33 bp upstream
Tssr58424	transcription start site region 58424			95 bp upstream
Tssr58425	transcription start site region 58425			140 bp upstream
Tssr58426	transcription start site region 58426			162 bp upstream
Tssr58427	transcription start site region 58427			189 bp upstream
Tssr58428	transcription start site region 58428			204 bp upstream
Tssr58429	transcription start site region 58429			269 bp upstream
Tssr58430	transcription start site region 58430			314 bp upstream
Tssr58431	transcription start site region 58431			410 bp upstream
Tssr58432	transcription start site region 58432			483 bp upstream
Tssr58433	transcription start site region 58433			519 bp upstream
Tssr58434	transcription start site region 58434			957 bp upstream
Tssr62617	transcription start site region 62617			636 bp upstream
Tssr62618	transcription start site region 62618			613 bp upstream
Tssr62619	transcription start site region 62619			577 bp upstream
Tssr62620	transcription start site region 62620			544 bp upstream
Tssr62621	transcription start site region 62621			460 bp upstream
Tssr62622	transcription start site region 62622			63 bp downstream
Tssr62623	transcription start site region 62623			81 bp downstream
Tssr62624	transcription start site region 62624			196 bp downstream
Tssr62625	transcription start site region 62625			347 bp downstream
Tssr62626	transcription start site region 62626			443 bp downstream
Tssr62627	transcription start site region 62627			474 bp downstream
Tssr62628	transcription start site region 62628			609 bp downstream
Tssr62629	transcription start site region 62629			789 bp downstream