rs4226228 SNP Detail

Summary

• ID
  rs4226228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151187 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGAAG TCAGATGAAG CATGCGTTTG
  R
  AGGCAAGCAG AGAGCAGGAA CGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6389221	AI174028_186	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4226228					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389221	AI174028_186	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151187 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1558 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			154 bp distal
Rr637291	regulatory region 637291			103 bp distal
Tssr58395	transcription start site region 58395			721 bp downstream
Tssr58396	transcription start site region 58396			707 bp downstream
Tssr58397	transcription start site region 58397			672 bp downstream
Tssr58398	transcription start site region 58398			649 bp downstream
Tssr58399	transcription start site region 58399			620 bp downstream
Tssr58400	transcription start site region 58400			587 bp downstream
Tssr58401	transcription start site region 58401			553 bp downstream
Tssr58402	transcription start site region 58402			524 bp downstream
Tssr58403	transcription start site region 58403			506 bp downstream
Tssr58404	transcription start site region 58404			495 bp downstream
Tssr58405	transcription start site region 58405			439 bp downstream
Tssr58406	transcription start site region 58406			410 bp downstream
Tssr58407	transcription start site region 58407			388 bp downstream
Tssr58408	transcription start site region 58408			325 bp downstream
Tssr58409	transcription start site region 58409			297 bp downstream
Tssr58410	transcription start site region 58410			279 bp downstream
Tssr58411	transcription start site region 58411			248 bp downstream
Tssr58412	transcription start site region 58412			236 bp downstream
Tssr58413	transcription start site region 58413			212 bp downstream
Tssr58414	transcription start site region 58414			190 bp downstream
Tssr58415	transcription start site region 58415			172 bp downstream
Tssr58416	transcription start site region 58416			154 bp downstream
Tssr58417	transcription start site region 58417			100 bp downstream
Tssr58418	transcription start site region 58418			74 bp downstream
Tssr58419	transcription start site region 58419			54 bp downstream
Tssr58420	transcription start site region 58420			19 bp downstream
Tssr58421	transcription start site region 58421			within coordinates
Tssr58422	transcription start site region 58422			11 bp upstream
Tssr58423	transcription start site region 58423			19 bp upstream
Tssr58424	transcription start site region 58424			81 bp upstream
Tssr58425	transcription start site region 58425			126 bp upstream
Tssr58426	transcription start site region 58426			148 bp upstream
Tssr58427	transcription start site region 58427			175 bp upstream
Tssr58428	transcription start site region 58428			190 bp upstream
Tssr58429	transcription start site region 58429			255 bp upstream
Tssr58430	transcription start site region 58430			300 bp upstream
Tssr58431	transcription start site region 58431			396 bp upstream
Tssr58432	transcription start site region 58432			469 bp upstream
Tssr58433	transcription start site region 58433			505 bp upstream
Tssr58434	transcription start site region 58434			943 bp upstream
Tssr62617	transcription start site region 62617			650 bp upstream
Tssr62618	transcription start site region 62618			627 bp upstream
Tssr62619	transcription start site region 62619			591 bp upstream
Tssr62620	transcription start site region 62620			558 bp upstream
Tssr62621	transcription start site region 62621			474 bp upstream
Tssr62622	transcription start site region 62622			49 bp downstream
Tssr62623	transcription start site region 62623			67 bp downstream
Tssr62624	transcription start site region 62624			182 bp downstream
Tssr62625	transcription start site region 62625			333 bp downstream
Tssr62626	transcription start site region 62626			429 bp downstream
Tssr62627	transcription start site region 62627			460 bp downstream
Tssr62628	transcription start site region 62628			595 bp downstream
Tssr62629	transcription start site region 62629			775 bp downstream