rs4226227 SNP Detail

Summary

• ID
  rs4226227
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151209 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCAGG CTACAGAGGT GAGAAGCGGA
  M
  GTCAGATGAA GCATGCGTTT GGAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss6389220	AI174028_164	TWGNF	TWGNF-Mouse	f	SNP	A		A			A		A	A	A	A				C
ss12741022	L12029_AN2229_7	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A		A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs4226227					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389220	AI174028_164	TWGNF	TWGNF-Mouse-2	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151209 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1580 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			176 bp distal
Rr637291	regulatory region 637291			125 bp distal
Tssr58395	transcription start site region 58395			743 bp downstream
Tssr58396	transcription start site region 58396			729 bp downstream
Tssr58397	transcription start site region 58397			694 bp downstream
Tssr58398	transcription start site region 58398			671 bp downstream
Tssr58399	transcription start site region 58399			642 bp downstream
Tssr58400	transcription start site region 58400			609 bp downstream
Tssr58401	transcription start site region 58401			575 bp downstream
Tssr58402	transcription start site region 58402			546 bp downstream
Tssr58403	transcription start site region 58403			528 bp downstream
Tssr58404	transcription start site region 58404			517 bp downstream
Tssr58405	transcription start site region 58405			461 bp downstream
Tssr58406	transcription start site region 58406			432 bp downstream
Tssr58407	transcription start site region 58407			410 bp downstream
Tssr58408	transcription start site region 58408			347 bp downstream
Tssr58409	transcription start site region 58409			319 bp downstream
Tssr58410	transcription start site region 58410			301 bp downstream
Tssr58411	transcription start site region 58411			270 bp downstream
Tssr58412	transcription start site region 58412			258 bp downstream
Tssr58413	transcription start site region 58413			234 bp downstream
Tssr58414	transcription start site region 58414			212 bp downstream
Tssr58415	transcription start site region 58415			194 bp downstream
Tssr58416	transcription start site region 58416			176 bp downstream
Tssr58417	transcription start site region 58417			122 bp downstream
Tssr58418	transcription start site region 58418			96 bp downstream
Tssr58419	transcription start site region 58419			76 bp downstream
Tssr58420	transcription start site region 58420			41 bp downstream
Tssr58421	transcription start site region 58421			17 bp downstream
Tssr58422	transcription start site region 58422			4 bp downstream
Tssr58423	transcription start site region 58423			within coordinates
Tssr58424	transcription start site region 58424			59 bp upstream
Tssr58425	transcription start site region 58425			104 bp upstream
Tssr58426	transcription start site region 58426			126 bp upstream
Tssr58427	transcription start site region 58427			153 bp upstream
Tssr58428	transcription start site region 58428			168 bp upstream
Tssr58429	transcription start site region 58429			233 bp upstream
Tssr58430	transcription start site region 58430			278 bp upstream
Tssr58431	transcription start site region 58431			374 bp upstream
Tssr58432	transcription start site region 58432			447 bp upstream
Tssr58433	transcription start site region 58433			483 bp upstream
Tssr58434	transcription start site region 58434			921 bp upstream
Tssr62617	transcription start site region 62617			672 bp upstream
Tssr62618	transcription start site region 62618			649 bp upstream
Tssr62619	transcription start site region 62619			613 bp upstream
Tssr62620	transcription start site region 62620			580 bp upstream
Tssr62621	transcription start site region 62621			496 bp upstream
Tssr62622	transcription start site region 62622			27 bp downstream
Tssr62623	transcription start site region 62623			45 bp downstream
Tssr62624	transcription start site region 62624			160 bp downstream
Tssr62625	transcription start site region 62625			311 bp downstream
Tssr62626	transcription start site region 62626			407 bp downstream
Tssr62627	transcription start site region 62627			438 bp downstream
Tssr62628	transcription start site region 62628			573 bp downstream
Tssr62629	transcription start site region 62629			753 bp downstream