rs4226226 SNP Detail

Summary

• ID
  rs4226226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151211 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGTCA GGCTACAGAG GTGAGAAGCG
  R
  AAGTCAGATG AAGCATGCGT TTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6389219	AI174028_162	TWGNF	TWGNF-Mouse	f	SNP	G			G			G			G	G	A	G										G
ss12741021	L12029_AN2229_6	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G		A	G				G		G	G			G
ss12759339	L12029_JC344_1	ROCHEBIO	RPAMM	f	SNP	G		G	G			G	G		G	G	A	G				G		G	G			G
ss60932508	NES16191117	PERLEGEN	MM_PANEL2	r	SNP		C		C	C		C		C	C		T	C	T	C	T		C			C	T		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4226226					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389219	AI174028_162	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss60932508	NES16191117	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151211 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1582 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			178 bp distal
Rr637291	regulatory region 637291			127 bp distal
Tssr58395	transcription start site region 58395			745 bp downstream
Tssr58396	transcription start site region 58396			731 bp downstream
Tssr58397	transcription start site region 58397			696 bp downstream
Tssr58398	transcription start site region 58398			673 bp downstream
Tssr58399	transcription start site region 58399			644 bp downstream
Tssr58400	transcription start site region 58400			611 bp downstream
Tssr58401	transcription start site region 58401			577 bp downstream
Tssr58402	transcription start site region 58402			548 bp downstream
Tssr58403	transcription start site region 58403			530 bp downstream
Tssr58404	transcription start site region 58404			519 bp downstream
Tssr58405	transcription start site region 58405			463 bp downstream
Tssr58406	transcription start site region 58406			434 bp downstream
Tssr58407	transcription start site region 58407			412 bp downstream
Tssr58408	transcription start site region 58408			349 bp downstream
Tssr58409	transcription start site region 58409			321 bp downstream
Tssr58410	transcription start site region 58410			303 bp downstream
Tssr58411	transcription start site region 58411			272 bp downstream
Tssr58412	transcription start site region 58412			260 bp downstream
Tssr58413	transcription start site region 58413			236 bp downstream
Tssr58414	transcription start site region 58414			214 bp downstream
Tssr58415	transcription start site region 58415			196 bp downstream
Tssr58416	transcription start site region 58416			178 bp downstream
Tssr58417	transcription start site region 58417			124 bp downstream
Tssr58418	transcription start site region 58418			98 bp downstream
Tssr58419	transcription start site region 58419			78 bp downstream
Tssr58420	transcription start site region 58420			43 bp downstream
Tssr58421	transcription start site region 58421			19 bp downstream
Tssr58422	transcription start site region 58422			6 bp downstream
Tssr58423	transcription start site region 58423			within coordinates
Tssr58424	transcription start site region 58424			57 bp upstream
Tssr58425	transcription start site region 58425			102 bp upstream
Tssr58426	transcription start site region 58426			124 bp upstream
Tssr58427	transcription start site region 58427			151 bp upstream
Tssr58428	transcription start site region 58428			166 bp upstream
Tssr58429	transcription start site region 58429			231 bp upstream
Tssr58430	transcription start site region 58430			276 bp upstream
Tssr58431	transcription start site region 58431			372 bp upstream
Tssr58432	transcription start site region 58432			445 bp upstream
Tssr58433	transcription start site region 58433			481 bp upstream
Tssr58434	transcription start site region 58434			919 bp upstream
Tssr62617	transcription start site region 62617			674 bp upstream
Tssr62618	transcription start site region 62618			651 bp upstream
Tssr62619	transcription start site region 62619			615 bp upstream
Tssr62620	transcription start site region 62620			582 bp upstream
Tssr62621	transcription start site region 62621			498 bp upstream
Tssr62622	transcription start site region 62622			25 bp downstream
Tssr62623	transcription start site region 62623			43 bp downstream
Tssr62624	transcription start site region 62624			158 bp downstream
Tssr62625	transcription start site region 62625			309 bp downstream
Tssr62626	transcription start site region 62626			405 bp downstream
Tssr62627	transcription start site region 62627			436 bp downstream
Tssr62628	transcription start site region 62628			571 bp downstream
Tssr62629	transcription start site region 62629			751 bp downstream