rs4226204 SNP Detail

Summary

• ID
  rs4226204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113601299 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCGG CGGCCGGTGC CCGGTGGTAA
  R
  ATCGGGTAGG GCTGAGGCTC GCCGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6389197	U12570_126	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4226204					SNP	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389197	U12570_126	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113601299 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	within coordinates
Gm66537	predicted gene, 66537	1454 bp downstream
Rr636555	regulatory region 636555	369 bp distal
Tssr58233	transcription start site region 58233	301 bp downstream
Tssr58234	transcription start site region 58234	276 bp downstream
Tssr58235	transcription start site region 58235	174 bp downstream
Tssr58236	transcription start site region 58236	329 bp upstream
Tssr62461	transcription start site region 62461	806 bp upstream
Vhl	von Hippel-Lindau tumor suppressor	Coding-Synonymous