rs4226172 SNP Detail

Summary

• ID
  rs4226172
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108823201 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTTAGCCACA GATGAAAAAT
  GAGGATAAAC ATGAAAAAAT AAATAAATAA ATGACTCAAC ATTTTGCTTT CCCACAGTGG
  TAATGCATTT CAAAACCCAA AGGAATATTC ACAGCCTTTT ACCCCGTATT CTCATTCCTT
  GGAATTTGTC CTGAAAATAA TGCTTACAGA AGCAAAAGGT CAGCACTGGG GATATAAGGT
  S
  AGTGGTGGAG GAGCTGCCTA ACACATACAA GGACCTGAGT TCTAACACCA CAAAAAATAG
  CCAGACATGG CAGTGCACAG GTGTACACGG TGAGGAGGTT AAGGGCATTT GGGGCTGCAC
  AGAGAGTGGA GGTCACATGC TACAAAGCAA GACTTTTATA GGGAAAAATA AATGTATAGC
  TTTGAAAAGT GGAAACTATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6389165	AA589488_68	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4226172					SNP	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389165	AA589488_68	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108823201 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr636223	regulatory region 636223			1892 bp distal
Rr636224	regulatory region 636224			1349 bp proximal
Tssr58121	transcription start site region 58121			1570 bp downstream