rs4226133 SNP Detail

Summary

• ID
  rs4226133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90451222 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCTG CTTCGTGGGA AGCGATGCAC
  Y
  TTGATGTGTT TGGAGAGGTG GTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss6389125	AW494632_374	TWGNF	TWGNF-Mouse	f	SNP	T		T		T		T	T	C	T					C
ss51362829	NES13737462	PERLEGEN	MM_PANEL2	r	SNP		A		A		A	A				A	A	A	A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs4226133					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6389125	AW494632_374	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss51362829	NES13737462	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90451222 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66826	predicted gene, 66826			1202 bp upstream
Klf15	Kruppel-like transcription factor 15			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr634215	regulatory region 634215			1025 bp proximal
Rr634216	regulatory region 634216			1213 bp proximal
Tssr57654	transcription start site region 57654			57 bp upstream