rs4224985 SNP Detail

Summary

• ID
  rs4224985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152369611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTCATA CAGGGGCAGA
  GGCCACCAGC TAGCCACTGT CTCTCTCACA GGTCTCAAAT GACCAATTTA CCACTTGGGT
  TTCACTCTGT ATTTTGTATT CAATGGCAAT ACTTGTAGTG GGGACATAGT CCCCCTCAGT
  CACTCCTGAT TTTTACAAAA CTTTAAGGGC AAACCCTGAA CTGAGGGCCG TAGGCACCTA
  R
  GGCTCTTTCC CACACTAAGT CCAGCCTCCC TGTTTGCTGA CAGCTCTAGC TATCTCTATA
  CCACCACCCA GCCCAGAGGC AGGGATTCGT TTGTATTTTT TTTTTTTTTG GAAAAAACAA
  AACAAAACAA AACAGCGTTT CTTTTCTGTA CAGGACCCAA TAAAAAATTC CTCATGGTTT
  GCACACATCC TTCTGAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss6387971	AI449320_199	TWGNF	TWGNF-Mouse	f	SNP	A			G	G	G	G	G			G
ss45590369	mCV23461092	ABI	CRAMUS_MOUSE	f	SNP		A	G			G		G
ss148080311	ENSMUSSNP2891925	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss321434066	CHEV_4_151659263	CHEVERUD	SCREENING_POP	f	SNP									A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs4224985					SNP	A	A	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387971	AI449320_199	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152369611 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15403	CpG island 15403			1082 bp distal
Cpgi15404	CpG island 15404			944 bp proximal
Gpr153	G protein-coupled receptor 153			mRNA-UTR
				Noncoding-Transcript-Variant
Hes3	hes family bHLH transcription factor 3			818 bp downstream
Rr605825	regulatory region 605825			1759 bp distal
Rr605826	regulatory region 605826			1143 bp distal
Rr605827	regulatory region 605827			541 bp proximal