rs4224223 SNP Detail

Summary

• ID
  rs4224223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132588994 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                           AAGCAGGC
  CTGTGCACAG AGGTGACGCT GCCGATGATG GAGCAACACT AGCACTGTCG AGGAGGACAA
  GATTGGAATT TTAATATCGA CAGAGCCCCA ACTTCGTCTC CTCCCTGTCA GACCGCTGTT
  Y
  TAAAAAAACA CATAGCTTTA GAGAGTCAAC TTTTCTCCTT AGCATTTCTC ACCCTTCTGA
  TTAAGTAATC AAAATATTTT CTGCTGTTTT TGCCAGGAGA CACAAAGATG ATTAAAGGGT
  TGGAAAAAAA GATCTATGGT GACAAACTAA AGGAACTGGG AGTGTTCTGC CTGGAGAAGA
  GAAGACTGAG GGGCAGGCCG TGGGGGCTCC TCCAGGCTGC GAAGGGTTGG CACCAAGAG 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6387198	AA682063_129	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4224223					SNP	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387198	AA682063_129	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132588994 () rs orientation: reverse

Symbol	Name	Function Class
Gm65623	predicted gene, 65623	within coordinates
Npnt	nephronectin	mRNA-UTR
Rr585475	regulatory region 585475	1938 bp distal
Rr585476	regulatory region 585476	58 bp proximal
Rr585477	regulatory region 585477	1315 bp proximal
Tssr35736	transcription start site region 35736	149 bp downstream