rs4223749 SNP Detail

Summary

• ID
  rs4223749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14965717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ATGAATTATG TTATAACTTA GTGACTTTTG ATTTCTAGAG GTGTAAATGA
  R
  GATGTAAAAA TTGATATAGT TGTGATACAG AGTATATTTC CCTTCAGATA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6386718	AI131712_297	TWGNF	TWGNF-Mouse	f	SNP	G		G		G		G	G	G	G							A
ss49562442	NES12905640	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G		G	G	G	G	G	G	G	A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4223749					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386718	AI131712_297	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss49562442	NES12905640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14965717 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	mRNA-UTR
Rr573732	regulatory region 573732	742 bp proximal
Rr573733	regulatory region 573733	1839 bp proximal