rs4223682 SNP Detail

Summary

• ID
  rs4223682
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172198449 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTCATGGCTG CCCTCAGGGT
  GCCTTGCTGA GCAACTAGTC CTTGGCCATG CATCCAGGAA ACCCCAAGAA CCATGCTGCT
  TTTCCTGATT TAGTAATCTG GAGGGAAGGT TCCACTGCAG CTGTCCCCTA CCCTCACCCT
  GGGCCTGTGC CCCAAGGTGT CCTTGTGGGG GGGGGGGTCT CACTGTGGGA AACTTACCAG
  W
  GATCACCTGT GTCGTAGCCT TCAAGTGCCA GAGTGTGTGT ATAACTTATT GGGTCACCAG
  GCCTAGGGAA ACTGTTGGAA TGGGTATGTA ATCTTTTAAA TGTCAAAATA AAGATTTGCA
  TAGACTTTGA CTTTTAAGTG ACACCCATTC AGGGTCTTGT TTCCAGTCGT CTGAAGCCCG
  TGCGGGATTT GGATCCTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386651	AW539821_243	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223682					SNP	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386651	AW539821_243	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172198449 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aurka	aurora kinase A			mRNA-UTR
				Noncoding-Transcript-Variant
Fam210b	family with sequence similarity 210, member B			780 bp downstream
Rr571656	regulatory region 571656			1110 bp distal
Rr571657	regulatory region 571657			within coordinates