rs4223227 SNP Detail

Summary

• ID
  rs4223227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74550247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                          GTTGGCTG GGGCTCAGAG TTTGGGCTCT TGTCTAGCAC
  TCCCAAGTTC CTACTGGGAG TTGCAATGGC AGCGGATGGG GTGGAGAAGC CCTGGGGAAC
  CTGGAGCACA CTAGTACTCT CTGCCAGATC CCTATTCTTT CTCTTTCATT CACAAAACCT
  R
  GGCCACTGGA GGTGTGATGC AATGGCAAGG GGTGGAGGAA GATGCATACT TGTTTCTTAA
  TCACTTTGTC TTTGAGCTCT AAGATCAGAA AACAAAGATG TCTGCCTCAG TGTATTTCTC
  CCCTCCCCCC CCCTCCATTT TCTCACACCT GATCTGATTT CCTGTCACTC CCTTAAACAC
  CCAGAGTAGG CTCCGTCTTC CCGTGGAACC TAAGTTTGCA AGCATGTCTC AGGCATCATT
  CTTCATCATT TCTCATCCAT AAAAAGTAAC TACTGATTGC CAGCC                
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386193	AI225831_159	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223227					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386193	AI225831_159	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74550247 () rs orientation: forward

Symbol	Name	Function Class
Hoxd3	homeobox D3	Intron
Igs15	intergenic site 15	within coordinates
Rr559377	regulatory region 559377	102 bp proximal
Rr559378	regulatory region 559378	976 bp proximal
Rr559379	regulatory region 559379	1915 bp proximal