rs4222954 SNP Detail

Summary

• ID
  rs4222954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6548807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATCCCG AGCCAAAGGC
  TGACTCAGCA TTACATAGGG GTGTTTAAGA AACAAAAGTA AAACTTCTTG AAAGATTGGA
  CCACCAAAAA GCCATTTAAC TCCAGGGTGT ATAAAAATAT TGTACACGAG GGCATACCAT
  GAAACCCTTA TCAAAAAGCA GACACGGTCT TTAGGGTTTG TGTAGGGCTA AGCTCTACCT
  R
  TTTTTCCCTT CCCAGGGTCT ACTCAGTCTC TTATATTTAA ACTGAAGGAG CACAGGGTGA
  TAGGAAGGAG GGGATAAAAA AGAAAATAAA AAACGGTTTA GGAAAAAGAC TTAAGGGTTT
  TTTGGGAAGG TGTGTGACTC AAAAAACAAA AAATAACTCA GAAGATACAA ATGGAAAAAA
  ATATCTAAAC ACCCCAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6385920	C88023_365	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4222954					SNP	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385920	C88023_365	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6548807 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	mRNA-UTR
Rr551420	regulatory region 551420	1271 bp proximal
Tssr22446	transcription start site region 22446	1251 bp upstream
Tssr22447	transcription start site region 22447	within coordinates