rs4222953 SNP Detail

Summary

• ID
  rs4222953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6548772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACCTTG CATATTCAGG
  TGTCCACATG CGTCTGAGAA TCCCGAGCCA AAGGCTGACT CAGCATTACA TAGGGGTGTT
  TAAGAAACAA AAGTAAAACT TCTTGAAAGA TTGGACCACC AAAAAGCCAT TTAACTCCAG
  GGTGTATAAA AATATTGTAC ACGAGGGCAT ACCATGAAAC CCTTATCAAA AAGCAGACAC
  K
  GTCTTTAGGG TTTGTGTAGG GCTAAGCTCT ACCTGTTTTT CCCTTCCCAG GGTCTACTCA
  GTCTCTTATA TTTAAACTGA AGGAGCACAG GGTGATAGGA AGGAGGGGAT AAAAAAGAAA
  ATAAAAAACG GTTTAGGAAA AAGACTTAAG GGTTTTTTGG GAAGGTGTGT GACTCAAAAA
  ACAAAAAATA ACTCAGAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6385919	C88023_330	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4222953					SNP	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385919	C88023_330	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6548772 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	mRNA-UTR
Rr551420	regulatory region 551420	1306 bp proximal
Tssr22446	transcription start site region 22446	1216 bp upstream
Tssr22447	transcription start site region 22447	16 bp downstream