rs4222952 SNP Detail

Summary

• ID
  rs4222952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6548771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACACCTT GCATATTCAG
  GTGTCCACAT GCGTCTGAGA ATCCCGAGCC AAAGGCTGAC TCAGCATTAC ATAGGGGTGT
  TTAAGAAACA AAAGTAAAAC TTCTTGAAAG ATTGGACCAC CAAAAAGCCA TTTAACTCCA
  GGGTGTATAA AAATATTGTA CACGAGGGCA TACCATGAAA CCCTTATCAA AAAGCAGACA
  Y
  GGTCTTTAGG GTTTGTGTAG GGCTAAGCTC TACCTGTTTT TCCCTTCCCA GGGTCTACTC
  AGTCTCTTAT ATTTAAACTG AAGGAGCACA GGGTGATAGG AAGGAGGGGA TAAAAAAGAA
  AATAAAAAAC GGTTTAGGAA AAAGACTTAA GGGTTTTTTG GGAAGGTGTG TGACTCAAAA
  AACAAAAAAT AACTCAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6385918	C88023_329	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4222952					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385918	C88023_329	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6548771 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	mRNA-UTR
Rr551420	regulatory region 551420	1307 bp proximal
Tssr22446	transcription start site region 22446	1215 bp upstream
Tssr22447	transcription start site region 22447	17 bp downstream