rs4220258 SNP Detail

Summary

• ID
  rs4220258
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93885468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGT GCCCTCTGGC CCACCCCGTG
  K
  TCTCTCTCTC TCTCTCTCTC TCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6383043	mCV25392472_92170828	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	T	G	T
ss39451165	mCV25392472	ABI	CRAMUS_MOUSE	f	SNP	G	G	T		T
ss148576874	ENSMUSSNP97527	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4220258					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93885468 () rs orientation: forward

Symbol	Name	Function Class
Gm31175	predicted gene, 31175	within coordinates
Gm49620	predicted gene, 49620	743 bp upstream
Gm60844	predicted gene, 60844	within coordinates
Rr520039	regulatory region 520039	1890 bp distal
Rr520040	regulatory region 520040	754 bp distal
Rr520041	regulatory region 520041	253 bp distal
Rr520042	regulatory region 520042	within coordinates
Rr520043	regulatory region 520043	333 bp proximal
Rr520044	regulatory region 520044	483 bp proximal
Sim2	single-minded family bHLH transcription factor 2	495 bp upstream
Tssr139539	transcription start site region 139539	308 bp upstream
Tssr139540	transcription start site region 139540	617 bp upstream