rs4212529 SNP Detail

Summary

• ID
  rs4212529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85600608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCTGGGCTG CAGTTTCCAA GAAAGAGGGT CGAATTGAAA AGATTCCTCA ACATTCCTTT
  TCTCCCCTAG TCAGAGCCTC TTCTGCCCCA AAGTGGGCTA TTAGCTACAG CTGCCTTTTC
  TTAAAAAGCA CCCTACTTTT CCGTCTCGTC TACGTTTCCA TGGGCACCAT GGCTAAAGCG
  TCCTTCTCTT TACCCCAGCT TTTCTTGGGC AAAGTGTTGA TTCTGCGCTT CTCAGGAAGA
  GAAAAGAAAG AGAGAGGAAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  W
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGGTGGT GGTGGTGGTG GTGGTTCATA
  GAGCACCTCT C                                                     
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss6375182	mCV24992813_83022255	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A
ss6375183	mCV24992814_83022257	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A
ss6375184	mCV24992824_83022259	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A
ss39419828	mCV24992813	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss39422482	mCV24992824	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss39429213	mCV24992814	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs4212529					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85600608 () rs orientation: forward

Symbol	Name	Function Class
Adamts1	ADAM metallopeptidase with thrombospondin type 1 motif 1	607 bp upstream
Cpgi8390	CpG island 8390	246 bp distal
D16Mit152	DNA segment, Chr 16, Massachusetts Institute of Technology 152	114 bp proximal
Rr518656	regulatory region 518656	117 bp distal
Rr518657	regulatory region 518657	884 bp proximal
Rr518658	regulatory region 518658	1757 bp proximal
Tssr141911	transcription start site region 141911	599 bp upstream
Tssr141912	transcription start site region 141912	235 bp downstream